rs31599540 SNP Detail

Summary

• ID
  rs31599540
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82982766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAAAGGC TCAGAGATAT
  AGACAGCAAG AGTCAGGTGT AGAGAACGGA TAGCACAGGA GAGGGAAAGG CCCCCCCCCA
  ACACCATCTA ATAGACCGGC AGGAGATCAA CCCCCACCCC AGCCCGCAGT GAGAGGCACC
  CAGATTTTCA CACGAGTAAA ATAAGAGGTG GGGAAGGGGC TGGTGGCAGC TTGTGGTCGC
  M
  GGATAAGCAG GGCAGAATGG AGTCACAGGG ACGGAAAGGG AAGAGGTAGA TGGAAATGAT
  GGGACACAGA TGGATGTGAA CATGAGGATG AGACTGAATG GAGGGACAGT GACTGTAGCC
  ATGGACCAGC AGGACAGACA GGAGCCGGCT GAGGTCATGG CTGCTGGAGG GGCTGGTTGA
  AGCAAGGGAA TTTTGAGGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39306189	mCV22803394	ABI	CRAMUS_MOUSE	f	SNP		A	C						A
ss51727806	NES14564652	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	C	A	A	C	A	C	C	A	A
ss148234835	ENSMUSSNP6315693	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31599540					SNP	A	A	C	C	C	A	C	A	A	C	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51727806	NES14564652	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82982766 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7437	CpG island 7437	1286 bp proximal
Rr304679	regulatory region 304679	1566 bp distal
Rr310854	regulatory region 310854	664 bp distal
Rr312184	regulatory region 312184	1034 bp proximal
Rr404540	regulatory region 404540	1454 bp upstream
Serhl	serine hydrolase-like	1628 bp upstream
Tssr132408	transcription start site region 132408	1636 bp upstream
Tssr132409	transcription start site region 132409	1716 bp upstream
Tssr132410	transcription start site region 132410	1741 bp upstream