rs31599728 SNP Detail

Summary

• ID
  rs31599728
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79213036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGGATAT AACCGGGAAG
  AGCCTGCTTT GATGTTGCCA GGTTCTCCCA AACCAAATTG CAAATAAAAA TATGGAATTA
  ACGGTTAGGT TGAAATAAGA CAAAATAAAA AAAACTTTCA GGTGGGGAGG GAGGTAATAC
  GCGCGCGCAT ATGTGTGGTG GGTGGTGGCC AACATAGGGT TTCTGTAGAC CAAGCTGGCT
  R
  TGAACTCAGA TTGCCTGGTG TGTGCCACAA GCTTTTTTTT TTTTTTTTTT TTTTTTTTTT
  TTTTTTTGAG ATAGGGTCTC CCACTGAATC TGGAGCTCCC CCACTGGGTT AGCCTAGCTG
  GCTATGGAAC TCCAGGAGGC TTCTTGTTTC CTCTTTCCCA GCTTTGAAGT TTAAAACATT
  TACCTTTTTC CGTGGGTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48068381	NES12091173	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	A	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31599728					SNP	G	A	A	A	A	A	G	A	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48068381	NES12091173	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79213036 () rs orientation: forward

Symbol	Name	Function Class
2310026G15Rik	RIKEN cDNA 2310026G15 gene	122 bp downstream
Cpgi7329	CpG island 7329	298 bp distal
Pla2g6	phospholipase A2, group VI	446 bp upstream
Rr404497	regulatory region 404497	314 bp downstream
Rr505593	regulatory region 505593	883 bp distal
Rr505594	regulatory region 505594	1095 bp distal
Rr505595	regulatory region 505595	93 bp distal
Rr505596	regulatory region 505596	607 bp proximal
Rr505597	regulatory region 505597	748 bp proximal
Rr505598	regulatory region 505598	1106 bp proximal
Rr505599	regulatory region 505599	1237 bp proximal
Tssr132082	transcription start site region 132082	1242 bp downstream
Tssr135328	transcription start site region 135328	686 bp upstream
Tssr135329	transcription start site region 135329	645 bp upstream
Tssr135330	transcription start site region 135330	575 bp upstream