rs31599730 SNP Detail

Summary

• ID
  rs31599730
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79213357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTATGGAAC TCCAGGAGGC
  TTCTTGTTTC CTCTTTCCCA GCTTTGAAGT TTAAAACATT TACCTTTTTC CGTGGGTGCT
  GGGTATCGAA CTCAGATCAT TGTGACAACT TCACAAGCAC TTTTCCTACT GAGGTATCTA
  ACCAGCCCCC GAACAAGCCT AGTGGCAAGT GATAAAACTG TATTTGTTGC CTACCAACTC
  W
  ACCTCAAGAT GCCAGGCAAT TCTGGGTGTG GTTATTGCAC ACGTACAATC TCAACATTTG
  GATGCTGGAT CAGGAGTTCA AACCCAGCCA CAACTAGTTC AGTTGAATCC CAACCTGGCA
  CTCTGTCTCT CAATAAATAA ATGAATGGAT GTCTGGAGGA ATCTTAGCAC TTTTAGTAGG
  ATTTTACTTG AATGACCTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48068383	NES12091095	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31599730					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48068383	NES12091095	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79213357 () rs orientation: forward

Symbol	Name	Function Class
2310026G15Rik	RIKEN cDNA 2310026G15 gene	443 bp downstream
Cpgi7329	CpG island 7329	619 bp distal
Pla2g6	phospholipase A2, group VI	767 bp upstream
Rr404497	regulatory region 404497	635 bp downstream
Rr505593	regulatory region 505593	1204 bp distal
Rr505594	regulatory region 505594	1416 bp distal
Rr505595	regulatory region 505595	414 bp distal
Rr505596	regulatory region 505596	286 bp proximal
Rr505597	regulatory region 505597	427 bp proximal
Rr505598	regulatory region 505598	785 bp proximal
Rr505599	regulatory region 505599	916 bp proximal
Tssr132082	transcription start site region 132082	1563 bp downstream
Tssr135328	transcription start site region 135328	1007 bp upstream
Tssr135329	transcription start site region 135329	966 bp upstream
Tssr135330	transcription start site region 135330	896 bp upstream