rs31599976 SNP Detail

Summary

• ID
  rs31599976
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115477619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT TAACTACTGA GCCATCTCTC
  Y
  AGCCCCGAGT TGTTAATTTT AAATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45550451	mCV23909416	ABI	CRAMUS_MOUSE	f	SNP		C	T	C
ss135664076	ENSMUSSNP3174525	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320892816	CHEV_3_115386888	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31599976					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115477619 () rs orientation: forward

Symbol	Name	Function Class
Gm64341	predicted gene, 64341	1847 bp downstream
Rr583575	regulatory region 583575	408 bp distal
Tssr31331	transcription start site region 31331	800 bp downstream
Tssr35267	transcription start site region 35267	1277 bp upstream