rs31600604 SNP Detail

Summary

• ID
  rs31600604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79213525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATAAAAC TGTATTTGTT
  GCCTACCAAC TCTACCTCAA GATGCCAGGC AATTCTGGGT GTGGTTATTG CACACGTACA
  ATCTCAACAT TTGGATGCTG GATCAGGAGT TCAAACCCAG CCACAACTAG TTCAGTTGAA
  TCCCAACCTG GCACTCTGTC TCTCAATAAA TAAATGAATG GATGTCTGGA GGAATCTTAG
  Y
  ACTTTTAGTA GGATTTTACT TGAATGACCT CTGTGAGGCT GAGAAGTAGC TGCGGTTGCG
  TCTGGGAATA GGTGATTGTC ACTGAGAAGA CTCAGACCTC ATGCCTAACT ATCATGGAAT
  TCCAATAGAT GGAATTAAAG TGAATAACGC GGGGGCTGGT GAGATGGTTC CTCGGTTAAG
  ACCACTGGCT GTTCTTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48068387	NES12091097	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31600604					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48068387	NES12091097	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79213525 () rs orientation: forward

Symbol	Name	Function Class
2310026G15Rik	RIKEN cDNA 2310026G15 gene	611 bp downstream
Cpgi7329	CpG island 7329	787 bp distal
Pla2g6	phospholipase A2, group VI	935 bp upstream
Rr404497	regulatory region 404497	803 bp downstream
Rr505593	regulatory region 505593	1372 bp distal
Rr505594	regulatory region 505594	1584 bp distal
Rr505595	regulatory region 505595	582 bp distal
Rr505596	regulatory region 505596	118 bp proximal
Rr505597	regulatory region 505597	259 bp proximal
Rr505598	regulatory region 505598	617 bp proximal
Rr505599	regulatory region 505599	748 bp proximal
Tssr132082	transcription start site region 132082	1731 bp downstream
Tssr135328	transcription start site region 135328	1175 bp upstream
Tssr135329	transcription start site region 135329	1134 bp upstream
Tssr135330	transcription start site region 135330	1064 bp upstream