rs31600607 SNP Detail

Summary

• ID
  rs31600607
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79213674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACTCTGT CTCTCAATAA
  ATAAATGAAT GGATGTCTGG AGGAATCTTA GCACTTTTAG TAGGATTTTA CTTGAATGAC
  CTCTGTGAGG CTGAGAAGTA GCTGCGGTTG CGTCTGGGAA TAGGTGATTG TCACTGAGAA
  GACTCAGACC TCATGCCTAA CTATCATGGA ATTCCAATAG ATGGAATTAA AGTGAATAAC
  K
  CGGGGGCTGG TGAGATGGTT CCTCGGTTAA GACCACTGGC TGTTCTTCCA GAGGTCCTGA
  GTTCAATTCC AGCAACCACA TGGTAGCTCT CAACCATCTG TAATGGGATC TAGTGCCCTC
  TCCTGGCATG CAGGCATACA TGCACACAGA GCACTCATAC CATAAATAAA TAAATAAATA
  GATAGATAGA TAGATAGATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48068391	NES12091099	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G	G	G	G	G	G	T	G	G	G
ss148197528	ENSMUSSNP2278522	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31600607					SNP	T	T	G	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48068391	NES12091099	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79213674 () rs orientation: forward

Symbol	Name	Function Class
2310026G15Rik	RIKEN cDNA 2310026G15 gene	760 bp downstream
Cpgi7329	CpG island 7329	936 bp distal
Pla2g6	phospholipase A2, group VI	1084 bp upstream
Rr404497	regulatory region 404497	952 bp downstream
Rr505593	regulatory region 505593	1521 bp distal
Rr505594	regulatory region 505594	1733 bp distal
Rr505595	regulatory region 505595	731 bp distal
Rr505596	regulatory region 505596	10 bp distal
Rr505597	regulatory region 505597	110 bp proximal
Rr505598	regulatory region 505598	468 bp proximal
Rr505599	regulatory region 505599	599 bp proximal
Tssr132082	transcription start site region 132082	1880 bp downstream
Tssr135328	transcription start site region 135328	1324 bp upstream
Tssr135329	transcription start site region 135329	1283 bp upstream
Tssr135330	transcription start site region 135330	1213 bp upstream