rs31600609 SNP Detail

Summary

• ID
  rs31600609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79213675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTCTGTC TCTCAATAAA
  TAAATGAATG GATGTCTGGA GGAATCTTAG CACTTTTAGT AGGATTTTAC TTGAATGACC
  TCTGTGAGGC TGAGAAGTAG CTGCGGTTGC GTCTGGGAAT AGGTGATTGT CACTGAGAAG
  ACTCAGACCT CATGCCTAAC TATCATGGAA TTCCAATAGA TGGAATTAAA GTGAATAACG
  Y
  GGGGGCTGGT GAGATGGTTC CTCGGTTAAG ACCACTGGCT GTTCTTCCAG AGGTCCTGAG
  TTCAATTCCA GCAACCACAT GGTAGCTCTC AACCATCTGT AATGGGATCT AGTGCCCTCT
  CCTGGCATGC AGGCATACAT GCACACAGAG CACTCATACC ATAAATAAAT AAATAAATAG
  ATAGATAGAT AGATAGATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48068393	NES12091100	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31600609					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48068393	NES12091100	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79213675 () rs orientation: forward

Symbol	Name	Function Class
2310026G15Rik	RIKEN cDNA 2310026G15 gene	761 bp downstream
Cpgi7329	CpG island 7329	937 bp distal
Pla2g6	phospholipase A2, group VI	1085 bp upstream
Rr404497	regulatory region 404497	953 bp downstream
Rr505593	regulatory region 505593	1522 bp distal
Rr505594	regulatory region 505594	1734 bp distal
Rr505595	regulatory region 505595	732 bp distal
Rr505596	regulatory region 505596	11 bp distal
Rr505597	regulatory region 505597	109 bp proximal
Rr505598	regulatory region 505598	467 bp proximal
Rr505599	regulatory region 505599	598 bp proximal
Tssr132082	transcription start site region 132082	1881 bp downstream
Tssr135328	transcription start site region 135328	1325 bp upstream
Tssr135329	transcription start site region 135329	1284 bp upstream
Tssr135330	transcription start site region 135330	1214 bp upstream