rs31600769 SNP Detail

Summary

• ID
  rs31600769
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135303963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAACC CCAAGAGGGG TCTCGGCACA
  M
  AGATCCTAGT CCATCTCAAG TAAGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45050213	mCV23630691	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss145532364	ENSMUSSNP6424840	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss319989534	CHEV_1_137272802	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31600769					SNP	C	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135303963 () rs orientation: forward

Symbol	Name	Function Class
Cpgi790	CpG island 790	749 bp distal
Rr12587	regulatory region 12587	563 bp distal
Rr28596	regulatory region 28596	562 bp distal
Rr30685	regulatory region 30685	1838 bp proximal
Shisa4	shisa family member 4	988 bp upstream
Tssr13847	transcription start site region 13847	1791 bp upstream
Tssr13848	transcription start site region 13848	1292 bp upstream
Tssr13849	transcription start site region 13849	1279 bp upstream
Tssr13850	transcription start site region 13850	1127 bp upstream
Tssr13851	transcription start site region 13851	1115 bp upstream
Tssr13852	transcription start site region 13852	997 bp upstream
Tssr13853	transcription start site region 13853	980 bp upstream
Tssr13854	transcription start site region 13854	961 bp upstream
Tssr13855	transcription start site region 13855	948 bp upstream
Tssr13856	transcription start site region 13856	940 bp upstream