rs31600780 SNP Detail

Summary

• ID
  rs31600780
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30826732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCAGACTCT CTGGGGGTGT CGGAACCCTT TCCTCTTCCT
  CTTCTGAGAA AGGTCATCTC TAGACACCCA AGAGGACTTG GAGGACAGTT TGAGGGACCA
  R
  TTTCCGTCTT CCTAATTATA GAGGTTAACC TTATCCAGTT CTTGGGGAGA TAAGGCTGAG
  ACATCCCAGA GACCTACTTA TGACACCTGA GATCCCTCG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46049765	mCV24561318	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss322139534	CHEV_7_31912326	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31600780					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30826732 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	1882 bp distal
Cpgi18837	CpG island 18837	within coordinates
Rr645025	regulatory region 645025	474 bp distal
Rr645026	regulatory region 645026	within coordinates
Rr645027	regulatory region 645027	1187 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	304 bp upstream
Tssr71935	transcription start site region 71935	582 bp upstream
Tssr71936	transcription start site region 71936	535 bp upstream
Tssr71937	transcription start site region 71937	373 bp upstream
Tssr71938	transcription start site region 71938	315 bp upstream
Tssr71939	transcription start site region 71939	265 bp upstream
Tssr71940	transcription start site region 71940	130 bp upstream