rs31602050 SNP Detail

Summary

• ID
  rs31602050
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:85601873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CACATAGTCA GGAGGAGGCA GGAAGGGAAA GAGGCCCACC AAGCCAACCT TCAGACTAGC
  AGAAGAAAGT AGGGGAAATT AAAGGCAGAA ATGAGAAATG GAGGTTAATA AATGTTGAGG
  TCAGAGGACT TTTTTTTCTG AAGAGGGAGG AGGAAGAGGA GGAAGAGGAG GAAGAGGAGG
  AGAAGGAGAA GGAGAAGGAG AAGGAGAAGG AGAAGGAGAA GAAGAAGAAG AAGAAGAAGA
  AGAAGAAGAA GAAGAAGAAG AAGAAGAAGA AGAAGAAGAA GAAGAAGAAG AAGAAGAAGA
  R
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AAGTGGCAAA
  TGGGGATTGG TATAGGGGGA ATAGAATTTA AGGAAAAGAG AGAGAAAATA TATCAGGGAA
  TCAAAATACA CATGAGAAGA AGTAGATAGG GAAACATACC CAAGACAGAC ATGAAGCTGT
  CCGTCACTGG ATCCAGATGA AGAACAGGAG TGATGGACAG AGCCATGAAG AAAACTAAGG
  AGCAAAATGG GAATGAAAGA AAGAGGCAGG CAGGGAAGTG TCTTAGTCAG GGTTTCTATC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45050627	mCV25291918	ABI	CRAMUS_MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs31602050					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85601873 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm55351	predicted gene, 55351			730 bp upstream
Sp100	nuclear antigen Sp100			Intron
				Noncoding-Transcript-Variant
Tssr7680	transcription start site region 7680			429 bp downstream