rs31602192 SNP Detail

Summary

• ID
  rs31602192
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34878487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGTCAGC TATCACCCTA
  TCAGCATTTA AAATAAACCC TACACTGGAC CCAAAGTGAA TAAAGGCTCT TGCTGCCAGG
  CCTGATGGTG TGAGTTCAAT CCCTGGAATG GAGAAAACCA ACTCCTTTGT AGTTCTGACT
  CCTACATAAG TGCTGTGGCA TGCATGTACT CCCCAACTCC TACATGCATA CTGTAAAAAC
  M
  CTAAGACTTT CCCTCTCTTT ATTATAGTAA TAGTGGAAAG TAGGTAGCGA GAGAGCGAGA
  GAGAGCGAGA GAGCAAGAGA GAGAGCAAGA GAGAGAGAGA GAGAGAGAGA AAAGCCCCAT
  CAAACACTGC GCATTACAGA CTATTACTAT CATGCAGTCC ATACCTTGAT GGGTAAGTAA
  GGAAGAGTTG CTTCACTGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39306213	mCV23392480	ABI	CRAMUS_MOUSE	f	SNP	C	A					A		A
ss49449274	NES12597219	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A		A	A	A	C	A	C	A	C	A
ss147562995	ENSMUSSNP5419408	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A							A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31602192					SNP	C	A	A	A	A	A	A	A	A	A	C	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49449274	NES12597219	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34878487 () rs orientation: forward

Symbol	Name	Function Class
Rr500781	regulatory region 500781	958 bp proximal
Stk3	serine/threonine kinase 3	within coordinates
Tssr133983	transcription start site region 133983	2000 bp upstream
Tssr133984	transcription start site region 133984	481 bp downstream