rs31602365 SNP Detail

Summary

• ID
  rs31602365
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84740875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGTATGAA AACTGATCTC TTGATTGGTC CTTTAATGAT
  TTTTTTTACA CTCACAATTA AACTCTCAAC AGATGTCCCT AGACTTTTTT TTTTCCAGAC
  M
  GTTGTTAAAA ATCGTAAACA CGACAGGTCA GTGTGACATA AAGCAATCAT AACTACAGCT
  GCGGAGATGA CATTTCAGAA TTCCCAGTCC CGGGGCCGG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39306414	mCV23859081	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss148258153	ENSMUSSNP4733296	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31602365					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84740875 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7469	CpG island 7469	80 bp distal
Phf21b	PHD finger protein 21B	625 bp upstream
Rr507073	regulatory region 507073	1074 bp distal
Rr507074	regulatory region 507074	135 bp distal
Rr507075	regulatory region 507075	892 bp proximal
Tssr135727	transcription start site region 135727	1590 bp upstream
Tssr135728	transcription start site region 135728	1547 bp upstream
Tssr135729	transcription start site region 135729	1529 bp upstream
Tssr135730	transcription start site region 135730	1486 bp upstream
Tssr135731	transcription start site region 135731	642 bp upstream
Tssr135732	transcription start site region 135732	617 bp upstream
Tssr135733	transcription start site region 135733	583 bp upstream
Tssr135734	transcription start site region 135734	563 bp upstream
Tssr135735	transcription start site region 135735	535 bp upstream
Tssr135736	transcription start site region 135736	128 bp upstream