rs31604113 SNP Detail

Summary

• ID
  rs31604113
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36394948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCAGTCCAT TGACACTGAT GGATGCGCCA ATGGTTGGAC
  GGACAGATGT TAGGGCGGAT CACACAGTGC GCGGCGCCTG AGCAGGGAGG GCTAGGCACT
  R
  GCAAGCAGGG GTGAGGACGG GCGACAGGGG AGCCGCTTGG GTCACGGCAC GAGGGTATGA
  GGGGTGGGGG TGGGCAGCGA GAGAACGAAG GTTGAGAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46050296	mCV25433247	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss148848938	ENSMUSSNP2446211	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss322166720	CHEV_7_37480542	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31604113					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36394948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18883	CpG island 18883	1005 bp distal
Cpgi18884	CpG island 18884	within coordinates
Gm36722	predicted gene, 36722	within coordinates
Gm38285	predicted gene, 38285	within coordinates
Gm72509	predicted gene, 72509	1119 bp upstream
Rr645553	regulatory region 645553	1561 bp distal
Rr645554	regulatory region 645554	within coordinates
Rr645555	regulatory region 645555	389 bp proximal
Tssr65916	transcription start site region 65916	1103 bp upstream
Tssr72063	transcription start site region 72063	547 bp downstream