rs31604122 SNP Detail

Summary

• ID
  rs31604122
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:118527238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGACAGGT GCTACAGGCT
  AATCATTACA AGCAGAAGCT CTGGGGCCAG ATGACCAGTC TTTTCAGCTG TTACTTCTGT
  CTCAGATACC TCAGGTGTCA GAGATGACAA CTGTAACTCC TTCAAATGTT ACTATGTGAA
  TTAAGTGGTT CAGTATATAC ACGGAGAACA ATGCCGGAAT ATTGGGAGGA CCGTGAATAC
  R
  TTCTATTAGT ATTATTTAAG CTTCAAGAGT TAGCTTTTCC CTGTCTTAAC TCCTGTGTTC
  ATCCGCTTTT AACCCCTTTT AAATTGTGGT TAAGCTGCTT CTGTTTTAAT GATGTCTGAG
  ACAGGGTCTC ATATCCAGCT CAGGCTGGCC ACAAATTAAG CTCCTGCCTC CACCTCCCAA
  GTGCTGGGAT TACAAATGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47569303	NES11185779	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31604122					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47569303	NES11185779	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:118527238 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21106	CpG island 21106	993 bp proximal
Gm10617	predicted gene 10617	1563 bp upstream
Mphosph6	M phase phosphoprotein 6	within coordinates
Rr401163	regulatory region 401163	1345 bp upstream
Tssr83111	transcription start site region 83111	1404 bp downstream
Tssr83112	transcription start site region 83112	1463 bp downstream