rs31604940 SNP Detail

Summary

• ID
  rs31604940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:118528113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGGCAGA GGCAGGCAAA
  TTTCTGAGTT CGAGGCCAGC CTGGTCTACA GAGTGAGTTC CAGGACAGCC AGGGCTACAC
  AGAGAAACCC TGTCTCGACC CCCCCCCCCC CCAACAAACA AACAAACAAA CAAAAAGCAA
  TTAACTCAGA AAACAGTTTC CTCCTGCTCA TGAGGCAACA GGAACAAAAC TTCAGCCTGG
  Y
  TTACAATTCC TTGGATGTGT GACCACTAAG ATTTCCAGCC TCATTTTATG CTCCTTGTCT
  TTCAGACGTC CGAGCTACCT TTAGTTCTTT GCAACGTCCC TGATTTTCTC CTTCTTAGCT
  TCTGGACTCA CTTTCCCTCA GTTTAGGACA CTACCTGCCA TCCCTCACGT TGTTCCTCCT
  TAGGGACCAC TTCTCGCGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47569312	NES11185658	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31604940					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47569312	NES11185658	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:118528113 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21106	CpG island 21106	118 bp proximal
Gm10617	predicted gene 10617	688 bp upstream
Mphosph6	M phase phosphoprotein 6	within coordinates
Rr401163	regulatory region 401163	470 bp upstream
Tssr83111	transcription start site region 83111	529 bp downstream
Tssr83112	transcription start site region 83112	588 bp downstream