rs31605929 SNP Detail

Summary

• ID
  rs31605929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58544675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGG GATACATGAA AATATTTGTT
  Y
  ACTAACAGGA CTACGTCATT TGGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45050674	mCV22736684	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss149138129	ENSMUSSNP554162	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31605929					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58544675 () rs orientation: forward

Symbol	Name	Function Class
Cpgi280	CpG island 280	272 bp distal
Gm15834	predicted gene 15834	within coordinates
Orc2	origin recognition complex, subunit 2	561 bp upstream
Rr396056	regulatory region 396056	267 bp downstream
Rr411446	regulatory region 411446	1867 bp distal
Rr411447	regulatory region 411447	418 bp distal
Rr411448	regulatory region 411448	533 bp distal
Rr411449	regulatory region 411449	349 bp distal
Rr411450	regulatory region 411450	within coordinates
Tssr6780	transcription start site region 6780	354 bp downstream
Tssr11783	transcription start site region 11783	574 bp upstream
Tssr11784	transcription start site region 11784	551 bp upstream