rs31606130 SNP Detail

Summary

• ID
  rs31606130
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:10981242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTGAAAT ATCTTAAAAC
  TCAGTAGCTG GTTAAAAGTG TTTTGGCTAC AACTATGTAG CATTTCGCCT TTGCTTTTAT
  TATCTTCCTC ACTTGTTAAG AATGGGTATG GGAGATTTCT AGCATTCAAG TCTGGCTCTA
  TTCAGTTTCC TAGAGCTGCA TCTGGCTACC TGCAAGCTCC CCCCATTACT AAGGGAAAAA
  R
  GACCTGTAAA TGAGGATGGA ATATTTGTGA TTATTTTGTT GCATTTTAAA GGCTGAAAAA
  AGTTTCTAAC TCAAAATTGT AACTGTCCGT AAAACTGACA GCTGACAAAC CAAACTGACT
  TCTAAAACTC TCCCATTTAA CCTGAGATGA ATAATTCTGA TATCCCAGAC TCTTCTAAAT
  GCTGGGATTA TCCGCGTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39307146	mCV24566644	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147066953	ENSMUSSNP7180827	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31606130					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:10981242 () rs orientation: forward

Symbol	Name	Function Class
Amacr	alpha-methylacyl-CoA racemase	633 bp upstream
C1qtnf3	C1q and tumor necrosis factor related protein 3	1006 bp downstream
Cpgi6946	CpG island 6946	185 bp proximal
Gm34315	predicted gene, 34315	within coordinates
Rr301970	regulatory region 301970	1042 bp distal
Rr311562	regulatory region 311562	within coordinates
Tssr130700	transcription start site region 130700	591 bp upstream
Tssr130701	transcription start site region 130701	624 bp upstream