rs31607165 SNP Detail

Summary

• ID
  rs31607165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:97238336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACTA TCTTGTGAGT
  AAAATACCAG CTGCTACAGA CACTTCTATG AAACCTAGAC ACGAATAAAC AAGATTTTGA
  TACCCACCAA CCCCAAGACG GAAAATTCAA ACAAGTATCG AGGACGTCAG AAGCTAATTT
  AGACCAGCTT AGGGGGTCTC TTTCTTTAGG GCCATGACTG AAAGGGGTGA GTTTTACACT
  Y
  GGGCCATTTG GAAAACAGGT GACACAAAGG AGACTGGTCA CACAAGTAAA TGACATTAGA
  CAACCGGAAG GTACCAGCGC CGTTAGGATA CGAACTTGTG CCAATTAGGG ACACATGATG
  TAACTACAGT TCAAATTTTC CCAAAACCTA AGTCAAATGT ACTTTTCAGT CGTGGTGACG
  AGTACTTGAG GGAGACAACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39307054	mCV23239974	ABI	CRAMUS_MOUSE	f	SNP	C	T	T						T
ss63608795	NES17040701	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	T	T	C		C	T	T		C
ss148436500	ENSMUSSNP3361868	ENSEMBL	ENSEMBL_Sanger	f	SNP			T						T
ss325076690	CHEV_15_97170886	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31607165					SNP	C	T	T	T	T	T	T	C	T	T	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63608795	NES17040701	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97238336 () rs orientation: forward

Symbol	Name	Function Class
Gm33325	predicted gene, 33325	within coordinates
Pced1b	PC-esterase domain containing 1B	Intron
Rr404591	regulatory region 404591	1948 bp upstream
Rr508792	regulatory region 508792	1069 bp distal
Rr508793	regulatory region 508793	1901 bp proximal
Tssr136111	transcription start site region 136111	1963 bp upstream