rs31607772 SNP Detail

Summary

• ID
  rs31607772
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189395764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTACATTT CAAAAATACC CTTCTAAGAA GTAAGAAGAC
  ATTTTTTGAA TCTTAAAGAA ACAATTAAGA CCCATCCTTC AAAACCTCAC TGCACTGTTA
  R
  AAAACAGATG GCCCTGGCGA TGCTATATTG GAAGGCTGCC TTCAATTATC AGTCTGGTTA
  CTACCAGCAG ATGGGTACCC ATGTAACAAA GCCAAATTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45051042	mCV27560345	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss146488397	ENSMUSSNP3775662	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31607772					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189395764 () rs orientation: forward

Symbol	Name	Function Class
Cenpf	centromere protein F	Intron
Gm70084	predicted gene, 70084	within coordinates
Rr425816	regulatory region 425816	1402 bp distal
Rr425817	regulatory region 425817	1490 bp distal
Rr425818	regulatory region 425818	within coordinates