rs31607974 SNP Detail

Summary

• ID
  rs31607974
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:128063848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTCCGC CTCCGTCCAG
  CCCCAGAGCG GTTTCTTCAA CTGCAGATCA GGCGGTGTGC TGGCTCCGCG TGGTTCTCCC
  GTCAGCCGGC CTTGCCCGCC TCTACTCTCA GAACTGCTGG TCCGTGTTCA ACAACCGACG
  CCTCACGCGA CGGGCAAAAG AGTGGCAACT CTGAACCCGG AGAGATGTAG CGGACATCGG
  R
  CAACACCAGA TCCAGCCTTG TCTTTGAGCA CGTGTTCTAA CCAGATAGGC CTTTCTAGAC
  TATACCGCTT GTAACTTGCT TTACAAGTTC CACAAGGATC GCTACCCATT ATCTCATCGG
  ATTAGTGGGT AAGGCTGCAA AAGAGCAGCC CCTCATTCAA ATGGCTTGTA CCGCTCTTTC
  AAATCCCTAC TTAAAACTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46049942	mCV24293244	ABI	CRAMUS_MOUSE	f	SNP		A	G				G		G
ss61060895	NES16065832	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	G		G	G	G	A	A	G	G	G
ss145891475	ENSMUSSNP2951001	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31607974					SNP	A	A	G	G	A	G	G	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61060895	NES16065832	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128063848 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19791	CpG island 19791	within coordinates
Gm32816	predicted gene, 32816	within coordinates
Rr368466	regulatory region 368466	187 bp downstream
Rr656040	regulatory region 656040	1921 bp distal
Rr656041	regulatory region 656041	1138 bp distal
Rr656042	regulatory region 656042	35 bp distal
Rr656043	regulatory region 656043	within coordinates
Rr656044	regulatory region 656044	202 bp proximal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1	407 bp upstream
Tssr2414	transcription start site region 2414	929 bp upstream
Tssr69425	transcription start site region 69425	150 bp downstream
Tssr75110	transcription start site region 75110	947 bp upstream
Tssr75111	transcription start site region 75111	798 bp upstream
Tssr75112	transcription start site region 75112	737 bp upstream
Tssr75113	transcription start site region 75113	724 bp upstream
Tssr75114	transcription start site region 75114	564 bp upstream
Tssr75115	transcription start site region 75115	502 bp upstream
Tssr75116	transcription start site region 75116	462 bp upstream