rs31608167 SNP Detail

Summary

• ID
  rs31608167
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:34447034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACTGTCAT CAGCTGACGA TGAAATAGGA TGTGATCAGA
  CAACACAGGA AGCAGATTCT GCTAATACTC TGCAGACAGC AGAAGTAAAA GAGAATGATG
  K
  AACTCGGTCA GCTGAAGATC CTGCAACTGA AGTTCCAGCA GTGTCCCAGA ATGCTAGAGC
  CAAACCCAGC CGACTCCAGG CTTCTGGCTT ATCTTCAGAA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ
ss49257415	NES12733449	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ
rs31608167					SNP	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49257415	NES12733449	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34447034 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Apc	APC, WNT signaling pathway regulator			Coding-NonSynonymous
				mRNA-UTR
Tssr150452	transcription start site region 150452			1155 bp downstream
Tssr150453	transcription start site region 150453			808 bp downstream
Tssr150454	transcription start site region 150454			779 bp downstream
Tssr150455	transcription start site region 150455			1169 bp upstream
Tssr150456	transcription start site region 150456			1777 bp upstream