rs31608556 SNP Detail

Summary

• ID
  rs31608556
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171073553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAG CCTGGTCTAC AGAGTGAGTT
  Y
  CAGGACTCCC AAGGCTACAC AGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45051046	mCV23616861	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss119996763	PARCsnp_1.12459	PARC_SEQ	INBRED	f	SNP		T	C
ss119998512	PARCsnp_1.01524	PARC_SEQ	INBRED	f	SNP		T	C
ss146158208	ENSMUSSNP743093	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320117539	CHEV_1_173176115	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31608556					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171073553 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1016	CpG island 1016	900 bp proximal
Gm71631	predicted gene, 71631	within coordinates
Ndufs2	NADH:ubiquinone oxidoreductase core subunit S2	within coordinates
Rr372446	regulatory region 372446	367 bp upstream
Rr423259	regulatory region 423259	1128 bp proximal
Rr423260	regulatory region 423260	1155 bp proximal
Rr423261	regulatory region 423261	1682 bp proximal
Tssr10000	transcription start site region 10000	1368 bp upstream
Tssr15023	transcription start site region 15023	1112 bp downstream