rs31608629 SNP Detail

Summary

• ID
  rs31608629
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16347748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAC CAATACGGAT CTCCACGGAG
  R
  TGGAACCGCA GGTCCTAAAG GGACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46050551	mCV23537706	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		A
ss51470072	NES13979797	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	A		A	A	G	G		A	G	G	A		G
ss148390838	ENSMUSSNP4298296	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
ss322111619	CHEV_7_17199172	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31608629					SNP	A	A	G	G	G	A	A	G	A	A	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51470072	NES13979797	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16347748 () rs orientation: forward

Symbol	Name	Function Class
Arhgap35	Rho GTPase activating protein 35	within coordinates
Cpgi18383	CpG island 18383	within coordinates
Gm29443	predicted gene 29443	1 bp upstream
Rr400125	regulatory region 400125	1552 bp upstream
Rr642705	regulatory region 642705	1977 bp distal
Rr642706	regulatory region 642706	within coordinates
Rr642707	regulatory region 642707	12 bp proximal
Rr642708	regulatory region 642708	1160 bp proximal
Rr642709	regulatory region 642709	1265 bp proximal
Tssr64615	transcription start site region 64615	1784 bp upstream
Tssr70753	transcription start site region 70753	725 bp downstream
Tssr70754	transcription start site region 70754	790 bp downstream
Tssr70755	transcription start site region 70755	847 bp downstream
Tssr70756	transcription start site region 70756	955 bp downstream
Tssr70757	transcription start site region 70757	969 bp downstream
Tssr70758	transcription start site region 70758	1026 bp downstream
Tssr70759	transcription start site region 70759	1058 bp downstream
Tssr70760	transcription start site region 70760	1135 bp downstream
Tssr70761	transcription start site region 70761	1231 bp downstream
Tssr70762	transcription start site region 70762	1250 bp downstream
Tssr70763	transcription start site region 70763	1443 bp downstream