rs31608659 SNP Detail

Summary

• ID
  rs31608659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18910767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGCTGCAA TACTGCAACG GTGAGAGCCC CCTTCCTAGT
  TCAGACCCTG GCCCCGCCCA GGGTGGACCT ACCTCCTCCT GCCCCAACCC TTTTCTTCCA
  R
  GTCCTTATCT CCTCCCTTGT GAGAGATTCT CCCTTTCTCC TCATCAACAG GATTCTGACC
  CCAAAACAAG GTCCTTTATC CCCAAAGTCA CGATCCTGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46050054	mCV25048376	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					A		G
ss60972640	NES16155328	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	A		A	G	A	G		A	A	A	A		A
ss148469570	ENSMUSSNP1643669	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss322116606	CHEV_7_19762191	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31608659					SNP	A	A	G	A	G	A	A	A	A	G	A	G	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60972640	NES16155328	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18910767 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18450	CpG island 18450	32 bp distal
Cpgi18451	CpG island 18451	1283 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Gm71808	predicted gene, 71808	231 bp upstream
Rr155272	regulatory region 155272	1434 bp proximal
Rr167138	regulatory region 167138	within coordinates
Tssr64790	transcription start site region 64790	402 bp downstream
Tssr64791	transcription start site region 64791	368 bp downstream
Tssr64792	transcription start site region 64792	330 bp downstream
Tssr64793	transcription start site region 64793	305 bp downstream
Tssr64794	transcription start site region 64794	149 bp downstream
Tssr64795	transcription start site region 64795	1361 bp upstream