rs3160878 SNP Detail

Summary

• ID
  rs3160878
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54042446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCTGGAC ATGGAAAACA
  GCACTTAAAC CATGCATTTT CAGATGCCCA AAGATTTCCT GACTTGTTCA ATTATGTGAC
  ACTTCAGAAT TTATGATTGT TGCTGTTAAA ATTAGAACAC AAGAATAGAT TCACCATAGA
  GGTCAAATAA CATGGCGGGG GTCGGGGGAG CTCTTCCGTG CTGGGAtggg ctgcagttag
  M
  ctatagggca ttttcttcat tagtgattga tggggaaggg cccagtctat tgtgggtcgt
  tccattccct gggatggcag atctgggttt tataagaaag agactgatca agccatggag
  agcaaggcaa taagtagagc ccctccttgg actctgcatc agctcctgcc tccaggttcc
  tgtcatgtct gcgttccggt                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139548782	ENSMUSSNP1561475	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324632378	CHEV_14_54424664	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs3160878					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54042446 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Rr492107	regulatory region 492107	1036 bp distal
Rr492108	regulatory region 492108	317 bp distal
Rr492109	regulatory region 492109	546 bp distal
Rr492110	regulatory region 492110	1195 bp proximal
Rr492111	regulatory region 492111	1409 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Trav17	T cell receptor alpha variable 17	1650 bp upstream
Tssr125501	transcription start site region 125501	1474 bp upstream
Tssr125502	transcription start site region 125502	1508 bp upstream