rs31608949 SNP Detail

Summary

• ID
  rs31608949
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34760336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTCTTTA CGTGTCTGTA
  TCTGTAATTT TAAGACCTTT TTATGTGCTA GTCAGTGTGT GGGATACTTT TATGTACATG
  AGATACCACT GATGTTATTA CTATTACTCT TCTCCCTGGT AAGAATACGA TGGCACATAT
  TGCAGTGACG GGGATTTTGC TGAAGCTATA GCGCTATTCA GTGGTAAAGA CAGAGCTGAG
  R
  TTTGGATCTA CCGTCTCCAA ACCCATGCTT ACACCCAACT GTACAACCCC GTGTGTGTGC
  ACAGCACTAC ACTTAACAGC ATTCCTTAAG TGTTTCATTA GGATGAACTG AACTAGCCGG
  GGCGATGGAG GCTTTAGCAT TTAGGAACAA CTGGAGTCCA TCAGGAAAGC CTGCTTGAGC
  AGGCTCCAGG GAGGATTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49256678	NES12717487	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31608949					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49256678	NES12717487	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34760336 () rs orientation: forward

Symbol	Name	Function Class
Kif20a	kinesin family member 20A	within coordinates
Rr352687	regulatory region 352687	935 bp distal
Rr353827	regulatory region 353827	1065 bp proximal
Rr353828	regulatory region 353828	1736 bp proximal