rs31608950 SNP Detail

Summary

• ID
  rs31608950
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34759953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGAATCTG TTACAGGCTC
  TACTGGAGGA CACCTCAGAG AAGGTGAAAG TTTACCTTCG AATTCGACCA TTCTTGACTT
  CAGAGTTGGA CCGACAGGAA GATCAGGTAG GATTTAAGGT GGATTTAAGG TTGTAGTAGG
  AGAGGCTCCC AGGAGTGCTC CTTTACTCGG TAAACCCTGC TTTCTACCTT TCCAGGGCTG
  Y
  GTCTGCATTG AGAATACAGA AACCCTTGTG CTGCAGGCAC CCAAAGACTC CTTTGCCTTG
  AAGAGTAATG AGAGGGGAGT TGGTCAGGCC ACTCACAAAT TTACCTTTTC CCAGGTATGC
  AATACTGCTG TACGAACATT TAGGAAATGT ATTTCTTCTT TAAAAGATTT CTACTCGAGT
  GTGGGTTCTT TACGTGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49256680	NES12717485	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31608950					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49256680	NES12717485	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34759953 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9821	CpG island 9821	1678 bp distal
Kif20a	kinesin family member 20A	within coordinates
Rr405583	regulatory region 405583	1873 bp downstream
Tssr150467	transcription start site region 150467	1900 bp downstream
Tssr150468	transcription start site region 150468	1869 bp downstream
Tssr150469	transcription start site region 150469	1847 bp downstream