rs31608951 SNP Detail

Summary

• ID
  rs31608951
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34758821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGAGATC TGTTGTCCGA
  AAGGACCTGT TGTCAGACTG CTCTGTCATC TCTGCCTCTC TGGAGGACAA GCAGGTAAAG
  GAGTTGAGTG GCTTAGGGGC AGAAAGTGGT ATCTTCAGCT AACAGTTGTT TATACAAGGT
  AGTATGAGAT CAAAAGCCAG TAATCCTGAA AAAATGAAAG ATCAGTTAAA AAATTAAGGG
  W
  AAAGCTGGGC ATTGTGGTGC ATACTTTTAA TCTCAGCACT TGGGAGACAG AAATAGCAGA
  TCTCTGAGTT AAGGCCTGCC TGGTTTACCA AATGAGTTCC AAGACAGCTA GCACTACACA
  GAGAAACCTT GTCTTGAAAA ATCAAAACTG GGTTGGGGAT TTAGCTCAGT GGTAGAGCAC
  TTGCCTAGCA AGTGCAAGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49256682	NES12717594	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31608951					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49256682	NES12717594	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34758821 () rs orientation: forward

Symbol	Name	Function Class
Brd8	bromodomain containing 8	1167 bp upstream
Cpgi9821	CpG island 9821	546 bp distal
Kif20a	kinesin family member 20A	within coordinates
Rr352687	regulatory region 352687	within coordinates
Rr370355	regulatory region 370355	1489 bp downstream
Rr370356	regulatory region 370356	1074 bp downstream
Rr405583	regulatory region 405583	741 bp downstream
Tssr5275	transcription start site region 5275	1166 bp upstream
Tssr150465	transcription start site region 150465	1139 bp downstream
Tssr150466	transcription start site region 150466	1106 bp downstream
Tssr150467	transcription start site region 150467	768 bp downstream
Tssr150468	transcription start site region 150468	737 bp downstream
Tssr150469	transcription start site region 150469	715 bp downstream
Tssr152814	transcription start site region 152814	1177 bp upstream
Tssr152815	transcription start site region 152815	953 bp upstream
Tssr152816	transcription start site region 152816	924 bp upstream