rs31608952 SNP Detail

Summary

• ID
  rs31608952
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34758243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCAGGAG TCTTGCTGCG
  CGGGTGGGTA GAAGCTGGGA TCAGAGAAGC GGCGAGGCAG ACAGTCTTCG GGTGAGTGAA
  GTTGGGCTGG AGCCCCGGTT ATCAGCTGCT GCTTGCGCGT CCGTAGAAGG CTCCTGTGTC
  TTCCATAATT CTCTAGGTCT CGTGGTCTTT GGAATAAGGT TGGAAAAGTA CCCTTGGGAT
  M
  CTAAAACACG CTCGCTGGCG GACCTGTAGA CCACCTCTGT AGAGCGTGGC CTTCCGTTCT
  GCTTTAGAAC TAGGTATCTC TCCGTGCCTA CTTACCTTCA GAAATGCAGC CTCCGGCTGT
  ACTAGTTCTC ATTCTCTTCC CCTTAGCTGA TAGTGGTGTA TAGTCTAGGC ATCCCACCCC
  ACCCCTTACC AGGTGCCTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49256684	NES12717592	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	C	A	C	C	C	C		C	A	C	C		C
ss325582395	CHEV_18_34784844	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31608952					SNP	A	C	C	C	C	A	C	C	C	C	A	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49256684	NES12717592	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34758243 () rs orientation: forward

Symbol	Name	Function Class
Brd8	bromodomain containing 8	589 bp upstream
Cpgi9821	CpG island 9821	within coordinates
Kif20a	kinesin family member 20A	within coordinates
Rr352687	regulatory region 352687	within coordinates
Rr370355	regulatory region 370355	911 bp downstream
Rr370356	regulatory region 370356	496 bp downstream
Rr405583	regulatory region 405583	163 bp downstream
Tssr5275	transcription start site region 5275	588 bp upstream
Tssr150465	transcription start site region 150465	561 bp downstream
Tssr150466	transcription start site region 150466	528 bp downstream
Tssr150467	transcription start site region 150467	190 bp downstream
Tssr150468	transcription start site region 150468	159 bp downstream
Tssr150469	transcription start site region 150469	137 bp downstream
Tssr152814	transcription start site region 152814	599 bp upstream
Tssr152815	transcription start site region 152815	375 bp upstream
Tssr152816	transcription start site region 152816	346 bp upstream