rs31608980 SNP Detail

Summary

• ID
  rs31608980
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:173258245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCC TGATCTGAAA CTCTGAAACA
  K
  CCAAAGCCGT GAGGACAAAT ACAAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49756372	NES13024243	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	G	T	T	T		T	T	G	T		T
ss146223204	ENSMUSSNP1300150	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss320132471	CHEV_1_175360810	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31608980					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49756372	NES13024243	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:173258245 () rs orientation: forward

Symbol	Name	Function Class
Aim2	absent in melanoma 2	Intron
Gm70266	predicted gene, 70266	within coordinates
Gm70269	predicted gene, 70269	1793 bp upstream
Rr372470	regulatory region 372470	528 bp upstream
Rr423699	regulatory region 423699	54 bp distal
Rr423700	regulatory region 423700	469 bp distal
Rr423701	regulatory region 423701	1714 bp proximal