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rs31608982 SNP Detail
Summary
  • ID
    rs31608982
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr1:173256774 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TCCCA CCGAGTCTCC TTTGAATTTC
    R
    TTGCCTAGTT GCCTTTACCT GTGTT                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss45176516 mCV22639897 ABI CRAMUS_MOUSE f SNP A A G A
ss49756376 NES13024245 PERLEGEN MM_PANEL2 f SNP A A A A A G A A A A G A A
ss146223189 ENSMUSSNP5679966 ENSEMBL ENSEMBL_Sanger f SNP A A A
ss320132467 CHEV_1_175359339 CHEVERUD SCREENING_POP f SNP A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs31608982 SNP A A A A A A G G A A A A A G A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49756376 NES13024245 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:173256774 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Aim2 absent in melanoma 2 Intron
Gm70266 predicted gene, 70266 within coordinates
Gm70269 predicted gene, 70269 322 bp upstream
Rr372470 regulatory region 372470 1999 bp upstream
Rr423698 regulatory region 423698 1535 bp distal
Rr423699 regulatory region 423699 878 bp proximal
Rr423700 regulatory region 423700 981 bp proximal
Tssr10272 transcription start site region 10272 1595 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory