rs31609848 SNP Detail

Summary

• ID
  rs31609848
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34757610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGTCTCCT CCCAACACTG
  TTAAACCCCA GGCGGGGGTC CCGAAAGCGA CAGGAAAGGC AGATCTCTGA GCTCTGCGCT
  CTCCGACAAC CCACTCCTCC CACGCCTTTC ACGCCTGAGA ATTGGGATGC TAGTCTCAAC
  TCTACAAAGG CCTTGACTAT AAAAGGGGGG CCGATACTCA CTGCCTGTCC CGGTCGCCAT
  S
  TTGGCTTCGA CGTCTTCAAC GTTGGCGACA GACGCGGGGA ACTCTGGGAA ACACAGTGCG
  AATCCGTTCG CGGTGCCTCG TGGGTAATGT GGGTGGGTCA GTTTGCCCTA ATAGAAGCGA
  AGTTCCTCTA GGAAAAAAAA ATCTGCTTTT TAACTAATAA AGGACAAGGG ATTGCGGCTG
  AAGCCTCAGA AAAGAAACGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49256690	NES12717584	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	C	C	C	C	C	C		C	C	C	C		C
ss325582394	CHEV_18_34784211	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31609848					SNP	G	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49256690	NES12717584	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34757610 () rs orientation: forward

Symbol	Name	Function Class
Brd8	bromodomain containing 8	within coordinates
Cpgi9821	CpG island 9821	within coordinates
Kif20a	kinesin family member 20A	67 bp upstream
Rr352687	regulatory region 352687	within coordinates
Rr370355	regulatory region 370355	278 bp downstream
Rr370356	regulatory region 370356	within coordinates
Rr405583	regulatory region 405583	169 bp upstream
Tssr5275	transcription start site region 5275	43 bp downstream
Tssr150465	transcription start site region 150465	64 bp upstream
Tssr150466	transcription start site region 150466	77 bp upstream
Tssr150467	transcription start site region 150467	398 bp upstream
Tssr150468	transcription start site region 150468	452 bp upstream
Tssr150469	transcription start site region 150469	485 bp upstream
Tssr152814	transcription start site region 152814	5 bp downstream
Tssr152815	transcription start site region 152815	215 bp downstream
Tssr152816	transcription start site region 152816	265 bp downstream