rs31610844 SNP Detail

Summary

• ID
  rs31610844
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34756812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGAAGGC TCAGAAACAA
  CCTCGGAGCT AGTCCTCAGC CCCAGAACTG CTAAACGCCT CATATAAAAT AACAACCCAG
  GCAGGACTAC TGTGGAGTAG TAATCCCGGC TCTCAGGATG CAGAGACTAG CCTGGTCTGC
  ATGAGTTCCA GTCCAGCCAG GATCAGTCAC ACGATAGTAG CCTGTCTCAA AATAAATACA
  W
  TCCAAACTCG TCCCAAGTGT GAACCACTAA CATCAATTAT TATCAACAAA TCTTGATTTT
  TTTTTTCACC GTTCCAATGA AATATCACCA TTACTGGCTA CGGTACTTTT TATTGAATAC
  ACATTTTTAG AACATCTTGT TTAAATGCCA CGGCTTTAAG GTGGTCTGCT TCCAAAAAAC
  AACAACAAAA AAGGCAGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49256698	NES12717563	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	A	T	T	T	T		T	A	T	T		T
ss325582392	CHEV_18_34783413	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31610844					SNP	A	T	T	T	T	A	T	T	T	T	A	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49256698	NES12717563	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34756812 () rs orientation: forward

Symbol	Name	Function Class
Brd8	bromodomain containing 8	within coordinates
Cpgi9821	CpG island 9821	325 bp proximal
Kif20a	kinesin family member 20A	865 bp upstream
Rr352687	regulatory region 352687	within coordinates
Rr370355	regulatory region 370355	219 bp upstream
Rr370356	regulatory region 370356	747 bp upstream
Rr405583	regulatory region 405583	967 bp upstream
Tssr5275	transcription start site region 5275	841 bp downstream
Tssr150465	transcription start site region 150465	862 bp upstream
Tssr150466	transcription start site region 150466	875 bp upstream
Tssr150467	transcription start site region 150467	1196 bp upstream
Tssr150468	transcription start site region 150468	1250 bp upstream
Tssr150469	transcription start site region 150469	1283 bp upstream
Tssr152814	transcription start site region 152814	803 bp downstream
Tssr152815	transcription start site region 152815	1013 bp downstream
Tssr152816	transcription start site region 152816	1063 bp downstream