rs31610845 SNP Detail

Summary

• ID
  rs31610845
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34756623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAACAA AACACAAAAA
  GAAAGATACT CAGTCACTCA GTGACATCTG ATGGCTCAAG AAATCAGGTA TCTTCGATTC
  CTTACCAGTT CTGATCCCCA CTCCTCATGA CAGAAGATGC TAAACACAAC TTCTCTCGGA
  TGGACCATGG CTCTGTTGGG CCAGTACTCA GCAGCTTGTG CTCTGGAAAT ACAGAAGGCT
  Y
  AGAAACAACC TCGGAGCTAG TCCTCAGCCC CAGAACTGCT AAACGCCTCA TATAAAATAA
  CAACCCAGGC AGGACTACTG TGGAGTAGTA ATCCCGGCTC TCAGGATGCA GAGACTAGCC
  TGGTCTGCAT GAGTTCCAGT CCAGCCAGGA TCAGTCACAC GATAGTAGCC TGTCTCAAAA
  TAAATACATT CCAAACTCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49256700	NES12717606	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31610845					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49256700	NES12717606	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34756623 () rs orientation: forward

Symbol	Name	Function Class
Brd8	bromodomain containing 8	within coordinates
Cpgi9821	CpG island 9821	514 bp proximal
Kif20a	kinesin family member 20A	1054 bp upstream
Rr370355	regulatory region 370355	408 bp upstream
Rr370356	regulatory region 370356	936 bp upstream
Rr405583	regulatory region 405583	1156 bp upstream
Tssr5275	transcription start site region 5275	1030 bp downstream
Tssr150465	transcription start site region 150465	1051 bp upstream
Tssr150466	transcription start site region 150466	1064 bp upstream
Tssr150467	transcription start site region 150467	1385 bp upstream
Tssr150468	transcription start site region 150468	1439 bp upstream
Tssr150469	transcription start site region 150469	1472 bp upstream
Tssr152814	transcription start site region 152814	992 bp downstream
Tssr152815	transcription start site region 152815	1202 bp downstream
Tssr152816	transcription start site region 152816	1252 bp downstream