rs31610979 SNP Detail

Summary

• ID
  rs31610979
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34542757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGTACGC TTAAAGGATA
  GGTAACCCAG GGCCCATTGG CAACTCCAGG TACCCAGGAA GGAGCTCTGA CCCCATACCT
  GCACTCCTGT GATGGTTGCC AGCGCTGCCA CCGAAGCGAA GTTCAGAGGA GGAGAGAGGC
  TGTCACCTCC GTGGGTGTGG GTCGCTTGAG GGAGTCGCGC CCTTGACCGC TAGCTACATC
  K
  GGAGCCAGAA GTCACTAAAA CTAGTTGTTT TTCCCATCTT AGTTACTTAT ATACGTTATA
  GTTACCCAGT AATATGAAGA AAATTTCTTG TTTTACATCT CACAGGGACT TCAAAACATG
  ACCTGCATTA CAGAAGGGAA GCGGAGGTTA ACACCACACT CGAGGAGTTG TTACTCTATT
  TTATTTTCTT AATAAATCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49257147	NES12728797	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31610979					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49257147	NES12728797	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34542757 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9817	CpG island 9817	within coordinates
Pkd2l2	polycystic kidney disease 2-like 2	within coordinates
Rr405581	regulatory region 405581	205 bp downstream
Rr535644	regulatory region 535644	268 bp distal
Rr535645	regulatory region 535645	within coordinates
Tssr5274	transcription start site region 5274	297 bp downstream
Tssr150459	transcription start site region 150459	1210 bp downstream
Tssr150460	transcription start site region 150460	1193 bp downstream
Tssr150461	transcription start site region 150461	333 bp downstream
Tssr150462	transcription start site region 150462	246 bp downstream