rs31610980 SNP Detail

Summary

• ID
  rs31610980
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34542510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACATCCAG AAAAATGAGC
  TATAAATAAA CCTCCAGCTG CGCAACTCTC AGGAGGTGAA GCGCGAGCCT TGGCGGTGCC
  CTATCTGCGC AGGCGCACAC AGGGCAAGCG CAGTTGCTCC GTTAGCACTC TGAGGCACTA
  CTGCGCAGGC GCGGGGCCGG GGCTAGGGCA GAACGGGCAT AGTGGAACGG ACCGTGTGGT
  M
  TGCTCCGCGA TGTCTGAGGC GACTTGGTGG TACCGAGGAG GTGAGGGTGG GTACGCTTAA
  AGGATAGGTA ACCCAGGGCC CATTGGCAAC TCCAGGTACC CAGGAAGGAG CTCTGACCCC
  ATACCTGCAC TCCTGTGATG GTTGCCAGCG CTGCCACCGA AGCGAAGTTC AGAGGAGGAG
  AGAGGCTGTC ACCTCCGTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49257148	NES12728796	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31610980					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49257148	NES12728796	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34542510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9817	CpG island 9817	within coordinates
Pkd2l2	polycystic kidney disease 2-like 2	within coordinates
Rr405581	regulatory region 405581	within coordinates
Rr535644	regulatory region 535644	21 bp distal
Rr535645	regulatory region 535645	within coordinates
Tssr5274	transcription start site region 5274	50 bp downstream
Tssr150459	transcription start site region 150459	963 bp downstream
Tssr150460	transcription start site region 150460	946 bp downstream
Tssr150461	transcription start site region 150461	86 bp downstream
Tssr150462	transcription start site region 150462	within coordinates