rs31610981 SNP Detail

Summary

• ID
  rs31610981
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34542442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAAGGGA GGGCTGACAC
  GTTTTTTGGC CACTCATGTT AATACTGCAG GTGGTGACAA TTTTCTTTTT ACATCCAGAA
  AAATGAGCTA TAAATAAACC TCCAGCTGCG CAACTCTCAG GAGGTGAAGC GCGAGCCTTG
  GCGGTGCCCT ATCTGCGCAG GCGCACACAG GGCAAGCGCA GTTGCTCCGT TAGCACTCTG
  M
  GGCACTACTG CGCAGGCGCG GGGCCGGGGC TAGGGCAGAA CGGGCATAGT GGAACGGACC
  GTGTGGTATG CTCCGCGATG TCTGAGGCGA CTTGGTGGTA CCGAGGAGGT GAGGGTGGGT
  ACGCTTAAAG GATAGGTAAC CCAGGGCCCA TTGGCAACTC CAGGTACCCA GGAAGGAGCT
  CTGACCCCAT ACCTGCACTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49257149	NES12728795	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31610981					SNP	A	A	A	A	A	C	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49257149	NES12728795	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34542442 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9817	CpG island 9817	within coordinates
Pkd2l2	polycystic kidney disease 2-like 2	within coordinates
Rr405581	regulatory region 405581	within coordinates
Rr535644	regulatory region 535644	within coordinates
Rr535645	regulatory region 535645	48 bp proximal
Tssr5274	transcription start site region 5274	8 bp upstream
Tssr150459	transcription start site region 150459	895 bp downstream
Tssr150460	transcription start site region 150460	878 bp downstream
Tssr150461	transcription start site region 150461	18 bp downstream
Tssr150462	transcription start site region 150462	26 bp upstream