rs31610982 SNP Detail

Summary

• ID
  rs31610982
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:34542339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGACAAAAG GGAGGGCTGA CACGTTTTTT GGCCACTCAT
  GTTAATACTG CAGGTGGTGA CAATTTTCTT TTTACATCCA GAAAAATGAG CTATAAATAA
  R
  CCTCCAGCTG CGCAACTCTC AGGAGGTGAA GCGCGAGCCT TGGCGGTGCC CTATCTGCGC
  AGGCGCACAC AGGGCAAGCG CAGTTGCTCC GTTAGCACTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49257150	NES12728794	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31610982					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49257150	NES12728794	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34542339 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi9817	CpG island 9817			within coordinates
Pkd2l2	polycystic kidney disease 2-like 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr405581	regulatory region 405581			within coordinates
Rr535644	regulatory region 535644			within coordinates
Rr535645	regulatory region 535645			151 bp proximal
Tssr5274	transcription start site region 5274			111 bp upstream
Tssr150459	transcription start site region 150459			792 bp downstream
Tssr150460	transcription start site region 150460			775 bp downstream
Tssr150461	transcription start site region 150461			77 bp upstream
Tssr150462	transcription start site region 150462			129 bp upstream