rs31610983 SNP Detail

Summary

• ID
  rs31610983
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34542099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTTACAA CCTGCCAGAT
  CATATCATGC ATAAACAAAA CCACATTTGG GCCTCTAGGT ATGGACACGT TTTTTAAATT
  CACACGTGGA TGTATTTAAT AAGTGAATTG TGAGAACACT GAAGATTTGG AGCTGGAACT
  CAGTGGGTTT GGTTTTTGAG GCCGGGACTC CACATATAGA CCAATGTTGT CCTCTAAATC
  M
  GGACCCTCTC GGTGTTCATT TCCTAGAGGC TCATATGACA AAATTGGATA ACCATGACCA
  TCAACGTTTT GTGTGTGTGT GTGTGTGTGC GCGCGCGCGC GCGCGAGCGC TAACTTGGTT
  CCTTTATTAA ATCAACAATA AGACAAAAGG GAGGGCTGAC ACGTTTTTTG GCCACTCATG
  TTAATACTGC AGGTGGTGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49257151	NES12728793	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31610983					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49257151	NES12728793	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34542099 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9817	CpG island 9817	139 bp proximal
Pkd2l2	polycystic kidney disease 2-like 2	within coordinates
Rr405581	regulatory region 405581	153 bp upstream
Rr535644	regulatory region 535644	within coordinates
Rr535645	regulatory region 535645	391 bp proximal
Tssr5274	transcription start site region 5274	351 bp upstream
Tssr150459	transcription start site region 150459	552 bp downstream
Tssr150460	transcription start site region 150460	535 bp downstream
Tssr150461	transcription start site region 150461	317 bp upstream
Tssr150462	transcription start site region 150462	369 bp upstream