rs31611644 SNP Detail

Summary

• ID
  rs31611644
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34541171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCAATAGC CAATGTCTTT TTTGGGGGTA AGGGGGAGAT
  GCCCTGTTTC ATTTAAAATA AGGAAAAACC TCTGATACTA TGTGATGCTG ACAGAAGAGA
  R
  GTGATGGAAT TGAGATGCAG CATGCTGACA GAAGAAGGCA GAAAACACAC ACAACTTATA
  ATGTCAAAAG ACTGAGCCAG TCAACAAGCC TTTAAGAAAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49257152	NES12728835	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31611644					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49257152	NES12728835	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34541171 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9817	CpG island 9817	1067 bp proximal
Pkd2l2	polycystic kidney disease 2-like 2	382 bp upstream
Rr405581	regulatory region 405581	1081 bp upstream
Rr535644	regulatory region 535644	815 bp proximal
Rr535645	regulatory region 535645	1319 bp proximal
Tssr5274	transcription start site region 5274	1279 bp upstream
Tssr150459	transcription start site region 150459	367 bp upstream
Tssr150460	transcription start site region 150460	388 bp upstream
Tssr150461	transcription start site region 150461	1245 bp upstream
Tssr150462	transcription start site region 150462	1297 bp upstream