rs31611645 SNP Detail

Summary

• ID
  rs31611645
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34540945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATGTGCC AGTCCTCTTT
  CTTTCCTTTC TTACTTTCTT TTCTTTTCTT TTTCCTTTTC TTTTGAATAG CCTTTGAATG
  TGCTTTGTAA CCAAGAACAA CTTGAACCAC TGACCCTTCT GCTCCACATT CCAAGCACTG
  GAATTACAGA AGTGAATCAC CACACCTGGC TCATCCATTG TTTTAATATT GTTATTTGAG
  R
  TTTCGTTAGG AAAACATAGG TGATCTCTGC AGGGAATTTT GGCGTTTATA ACTGTGTTGA
  AGTTCTCCTT CAGCAAGTAG GATGGTCTAG ACTCCAGCCT GAGGGGCTCT TTCCCTCTCT
  TGTCCCTTCA ATAGCCAATG TCTTTTTTGG GGGTAAGGGG GAGATGCCCT GTTTCATTTA
  AAATAAGGAA AAACCTCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49257153	NES12728834	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31611645					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49257153	NES12728834	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34540945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9817	CpG island 9817	1293 bp proximal
Pkd2l2	polycystic kidney disease 2-like 2	608 bp upstream
Rr405581	regulatory region 405581	1307 bp upstream
Rr535643	regulatory region 535643	1998 bp distal
Rr535644	regulatory region 535644	1041 bp proximal
Rr535645	regulatory region 535645	1545 bp proximal
Tssr5274	transcription start site region 5274	1505 bp upstream
Tssr150459	transcription start site region 150459	593 bp upstream
Tssr150460	transcription start site region 150460	614 bp upstream
Tssr150461	transcription start site region 150461	1471 bp upstream
Tssr150462	transcription start site region 150462	1523 bp upstream