rs31611971 SNP Detail

Summary

• ID
  rs31611971
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154933814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGACTCGT GCATGCCACC TGTCCCTGCC CTGGTTTACT
  TTCTATTGCT ATGATAAACA TAATGATAAG ATGAAACTTG GGGAGGGAAA GGGTTTATTC
  R
  GCTTCCAATC ACGGTATGTC ATTGAGGGAA GTCAGAGCAG GAACCTGGAG GCAGAAACTG
  AAGCAGAGGC CCCTGAGACA CACATTGCTT ACTGGCTTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45050979	mCV24610722	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss145774490	ENSMUSSNP1408050	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31611971					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154933814 () rs orientation: forward

Symbol	Name	Function Class
Cpgi880	CpG island 880	1594 bp proximal
Gm29282	predicted gene 29282	889 bp upstream
Gm41980	predicted gene, 41980	within coordinates
Gm51651	predicted gene, 51651	within coordinates
Gm70900	predicted gene, 70900	929 bp downstream
Rr372279	regulatory region 372279	771 bp downstream
Rr396410	regulatory region 396410	1490 bp upstream
Tssr248	transcription start site region 248	1455 bp downstream
Tssr9521	transcription start site region 9521	1618 bp upstream
Tssr9522	transcription start site region 9522	1876 bp upstream
Tssr14331	transcription start site region 14331	1466 bp downstream
Tssr14332	transcription start site region 14332	1480 bp downstream
Tssr14333	transcription start site region 14333	1490 bp downstream