rs31614417 SNP Detail

Summary

• ID
  rs31614417
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4841852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCACCCTGT GCCCATAGTA TTCAGGGGGC CCAATGGCGC
  CTCAGCAGGT GTAGCTGCTC AGCACTCGCA ATGCTTTGCT GCATGGTATG GGCACTGCCC
  R
  GGTTTAAAAG TGGTCAGCCC CTGGAATTCC GAGGATGCAA AAGGACTTAT TAAATCGGCT
  ATTCGTGATA ATAGCCCAGT GGTAATGCTA GAAAATGAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45051702	mCV24645168	ABI	CRAMUS_MOUSE	f	SNP	A	A	A			A		G
ss50908902	NES13484771	PERLEGEN	MM_PANEL2	f	SNP			A	A	A		A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31614417					SNP	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50908902	NES13484771	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4841852 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	within coordinates
Mrpl15	mitochondrial ribosomal protein L15	1580 bp downstream
Rr407423	regulatory region 407423	1299 bp distal
Rr407424	regulatory region 407424	1553 bp distal
Tssr5799	transcription start site region 5799	507 bp downstream