rs31614611 SNP Detail

Summary

• ID
  rs31614611
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:173154193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCCATGA TTCACTTTTC
  TTCAAGTGCA GATGGAATAT GATGGCCCTT CCCTCCTCTT CCTGGCTGTC CCAAGCCTAG
  CATTGTCCCC AGAAGAACCC AAGTATTATT TTTTCATTGC ATGATTCAAG AACTGTGTTG
  AGACCCTGAG CTCTGTCAGC CATGAAATGG CATAGAAGCA GTACTTATGG ACCCTGAAAT
  R
  ATTAAATAAC ACAAGAGAAA CAGCTTGCAG AACTCAGAGA GTTAGTGTTG TTGTAGATGA
  TTGTGTTTGG TATGGTTTGG TTTTACAGAT TGCACCCCCA ATTGTTTTTG TGCTTGTTCC
  TGTTCCTCTT ATCACCAGAC TATGAACCCT CCAGTGTGAG AAGCTATGCT TTATTCATAC
  AAAGTCAACT AATTTACTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45164142	mCV23111336	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss49757141	NES13025343	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	G	A		G	G	G	G		G	A	G	G		G
ss146220297	ENSMUSSNP3041356	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss320131724	CHEV_1_175256757	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31614611					SNP	A	A	G	G	A	G	A	G	G	G	G	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49757141	NES13025343	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:173154193 () rs orientation: forward

Symbol	Name	Function Class
Rr423671	regulatory region 423671	710 bp distal
Rr423672	regulatory region 423672	1928 bp proximal