rs3161542 SNP Detail

Summary

• ID
  rs3161542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52817001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATACTTC CTCCAGAAAA
  GTCACCCCCT TTAACTCTCC TAAATAGCTA CCAACCAGGG ATCAAGGATT CAAATGCTAT
  TCAGGGATGT TTTGTTCCAA TTATCACACT TAGATAATCT ATAGTTGAAG AGGAACAATT
  TCAAAATCAT GTTAGATTTC TCCTCACATT CTAAAGGCTA ACTTTCTGGT TGGAGGGAAC
  Y
  ATTGTTATTA ACACTTGCAA CTGTACTTGT ATTCTATTGC TGTGATAAAA GCCATGACCA
  AAAACTAGTC ATGAGAGGAA AATATCTATT TCAGCTCAAC TTCAAGGTCG TATGTAGTCC
  ATCATCGTGG GAACTCATAG CAGGAACTGA TTTAGAGACC ACATAGGAGT TCTGATTACT
  GATTTTTCTC CTCATGGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39241688	mCV23549513	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss139509577	ENSMUSSNP397443	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss324630116	CHEV_14_53199219	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3161542					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52817001 () rs orientation: forward

Symbol	Name	Function Class
Rr491934	regulatory region 491934	887 bp proximal
Rr491935	regulatory region 491935	963 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Trav3-1	T cell receptor alpha variable 3-1	1218 bp upstream
Tssr125465	transcription start site region 125465	1040 bp upstream