rs3161543 SNP Detail

Summary

• ID
  rs3161543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52817110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGATAATC TATAGTTGAA
  GAGGAACAAT TTCAAAATCA TGTTAGATTT CTCCTCACAT TCTAAAGGCT AACTTTCTGG
  TTGGAGGGAA CTATTGTTAT TAACACTTGC AACTGTACTT GTATTCTATT GCTGTGATAA
  AAGCCATGAC CAAAAACTAG TCATGAGAGG AAAATATCTA TTTCAGCTCA ACTTCAAGGT
  Y
  GTATGTAGTC CATCATCGTG GGAACTCATA GCAGGAACTG ATTTAGAGAC CACATAGGAG
  TTCTGATTAC TGATTTTTCT CCTCATGGCT TGCTTAATAT GACTTCTTCT ACAACCCACT
  AACTACTACC TGCCAAGTGG TGGCACCACC CACAGTGAGC TGGGCTCTTC CACATAAGAC
  AATGCCCCAA GATATGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39289247	mCV23549512	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss139509580	ENSMUSSNP1907279	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss324630118	CHEV_14_53199328	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3161543					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52817110 () rs orientation: forward

Symbol	Name	Function Class
Rr491934	regulatory region 491934	778 bp proximal
Rr491935	regulatory region 491935	854 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Trav3-1	T cell receptor alpha variable 3-1	1109 bp upstream
Tssr125465	transcription start site region 125465	931 bp upstream