rs3161546 SNP Detail

Summary

• ID
  rs3161546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52818498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCCTGAA ATCACTGTAG
  GGAGGAAAGC AATGGCTGGA GAATGGCAGC CTGATGGTCT TCTGCTGGTT CCTTCTGCAC
  AGGTGTGAGC AGAGGCGAGC AGGTGGAGCA GCGCCCTCCT CACCTGAGTG TCCGGGAGGG
  AGACAGCGCC ATTATCATCT GCACCTACAC AGACAGTGCC ACTGCTTACT TCTCCTGGTA
  Y
  AAGCAAGAGG CGGGGGCAGG TCTTCAGTTG CTTATGAGTG TCCTTTCAAA TGTGGACAGA
  AAAGAAGAAC AAGGACTCAC TGTCTTACTG AACAAGAAAG ACAAACGACT CTCTCTGAAC
  CTCACAGCTG CCCATCCTGG GGACTCAGCC GTGTACTTCT GCGCAGTCAG TGCACAGTGC
  CCCCCAGGCA CCTGCAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39183529	mCV23549508	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss139509592	ENSMUSSNP3063351	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3161546					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52818498 () rs orientation: forward

Symbol	Name	Function Class
Rr491934	regulatory region 491934	422 bp distal
Rr491935	regulatory region 491935	513 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Trav3-1	T cell receptor alpha variable 3-1	within coordinates
Tssr125465	transcription start site region 125465	451 bp downstream