rs3161547 SNP Detail

Summary

• ID
  rs3161547
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52819303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATA TTTGGCCTAG AACTTGCTAG
  S
  TAAAGTTTCT ACGGGTATTT TTTAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39229608	mCV23549506	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	G
ss324630124	CHEV_14_53201521	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3161547					SNP	G	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52819303 () rs orientation: forward

Symbol	Name	Function Class
Rr491934	regulatory region 491934	1227 bp distal
Rr491935	regulatory region 491935	1318 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Trav3-1	T cell receptor alpha variable 3-1	633 bp downstream
Tssr125465	transcription start site region 125465	1256 bp downstream