rs3161548 SNP Detail

Summary

• ID
  rs3161548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52820005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TATCCCATTC CCCCTCCTCC CTGCTTCTAT GAGGGTGCTT TCCCACCCAC CCACCCACCC
  TCCCACTCCT GCCTCACCAC CTGAACATTC CCATATGCTG GAGCATTAAG CCTTCACAGG
  ACCAAGGGCC TTCTCTCCCA TTGATGCCAG ATAAGGTCAA CCTCTGCTAA ATATGCAGCT
  GGAGCCATGG GTCCTTCCAT ATGCATTCTT TGGTTGGTGG TTTAGTTCCT GGGAGCTCTG
  GGGGGGAGGG AGTCTGGTTG GTTGATATTG TTGTTCTTCC TATGGGGTTG CAAACCCCTT
  Y
  CACTTCTTCA GTCCTTTCCC TAACTCCTCC ATTGGAATAT CCCTGTGCTC AGTCTGATGA
  TTCGCTGCAA GCATTCATAT CTGTATCGGT AAGGCTCTGG CAGAGCGTCT CAGGAGACAT
  CCATATCAGG TTCCTGTCAG CAAGTACTTC TTGACATCAG CAATAGTGAC TGGGTTTGGT
  GGCTGCATAC AAGTTGTACT TCGTTTATTA TCTTGCTTGT CTTATTGCTG CAGCTAAGAC
  TCCTAATGCT ATATTGAATA AGAGTGAAGA AAGTGAATCT CTTTGTCCTG TTCTTGATTT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39300159	mCV23549504	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss139509598	ENSMUSSNP1912180	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss324630126	CHEV_14_53202223	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3161548					SNP	T	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52820005 () rs orientation: forward

Symbol	Name	Function Class
Rr491934	regulatory region 491934	1929 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Trav3-1	T cell receptor alpha variable 3-1	1335 bp downstream
Tssr125465	transcription start site region 125465	1958 bp downstream