rs3161549 SNP Detail

Summary

• ID
  rs3161549
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52820044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTCCCACCCA CCCACCCACC CTCCCACTCC TGCCTCACCA CCTGAACATT CCCATATGCT
  GGAGCATTAA GCCTTCACAG GACCAAGGGC CTTCTCTCCC ATTGATGCCA GATAAGGTCA
  ACCTCTGCTA AATATGCAGC TGGAGCCATG GGTCCTTCCA TATGCATTCT TTGGTTGGTG
  GTTTAGTTCC TGGGAGCTCT GGGGGGGAGG GAGTCTGGTT GGTTGATATT GTTGTTCTTC
  CTATGGGGTT GCAAACCCCT TCCACTTCTT CAGTCCTTTC CCTAACTCCT CCATTGGAAT
  R
  TCCCTGTGCT CAGTCTGATG ATTCGCTGCA AGCATTCATA TCTGTATCGG TAAGGCTCTG
  GCAGAGCGTC TCAGGAGACA TCCATATCAG GTTCCTGTCA GCAAGTACTT CTTGACATCA
  GCAATAGTGA CTGGGTTTGG TGGCTGCATA CAAGTTGTAC TTCGTTTATT ATCTTGCTTG
  TCTTATTGCT GCAGCTAAGA CTCCTAATGC TATATTGAAT AAGAGTGAAG AAAGTGAATC
  TCTTTGTCCT GTTCTTGATT TTCCTGTAAA GGGTTTGGAT TTTTGCCCAT TTAATTTATA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39219819	mCV23549503	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss139509601	ENSMUSSNP2978659	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss324630127	CHEV_14_53202262	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3161549					SNP	A	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52820044 () rs orientation: forward

Symbol	Name	Function Class
Rr491934	regulatory region 491934	1968 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Trav3-1	T cell receptor alpha variable 3-1	1374 bp downstream
Tssr125465	transcription start site region 125465	1997 bp downstream